Rat Genome

mRatBN7.2 is the latest rat Reference genome

Get mRatBN7.2 fasta files from NCBI, Ensembl, UCSC, or GRC.

View the mRatBN7.2 in NCBI, Ensmbl, RGD or UCSC browsers

Transitioning to mRatBN7.2

• UCSC liftover chain file
• NCBI genome remapping service

Known issue of mRatBN7.2 under curation by the GRC

Genomic data for inbred strains

• Whole genome sequencing data from SRA (to be added)
• Unpublished linked-read data (http://hrdp.opar.io)
• Genomic variants mapped to mRatBN7.2 from [MCW]

Training

• Register for next talk
• Latest talk: Webinar #25 – Mouse Phenome Database: Resources and analysis tools for curated and integrated primary mouse phenotype and genotype data
• Link to all previous talks

News and Grant Opportunities

Tweets by OPAR

Rat Transcriptome

Gene annotation on mRatBN7.2

• Annotation report from [RefSeq]
• Gtf files from [RefSeq] or [Ensembl] or [UCSC]

Brain transcriptomic data

• Raw data from SRA
• GeneNetwork
• PhenoGen
• RatGTEx

Rat Proteome

Brain proteomics data for the HXB/BXH panel

Rat Metabolome

Brain metabolome data for the HXB/BXH panel

Rat Epigenome

Data from SRA

Addiction Bibliome

• GeneCup
• Addition genes from GWAS Catlog](opar_gwas_addiction.tab) data extracted from GWAS Catlog (2021-09-23).